Joseph Harman's repositories
bioimage_quant
Simple image quantification software. Currently implemented for SDS-PAGE gels, western blots, and yeast spotting assays.
ama-parser
Takes 96-well plate reader data, converts to pandas dataframe, and allows for analysis/plotting of bacterial growth curves
python_for_scientists
Python Open Courseware for Scientists and Engineers
guide-to-working-as-team-on-github
A quick guide to working as a team on Github
phylogenetics
A Python API for managing phylogenetics projects
python-for-scientists
The easy way to set up Python for a scientist.
DeepLabCut
Markerless tracking of user-defined features with deep learning
herbivory-defense-simulation
A computational approach to model the evolution of herbivory defense compounds in plants.
jharman25.github.io
:sparkles: Build a beautiful and simple website in literally minutes. Demo at http://deanattali.com/beautiful-jekyll
mapbox-gl-js
Interactive, thoroughly customizable maps in the browser, powered by vector tiles and WebGL
phylo_tools
python tools for phylogenetic inference
phylopandas
Pandas DataFrames for phylogenetics
physical-biochemistry
course material for physical biochemistry class taught at the University of Oregon
pytc-demos
Set of jupyter notebooks illustrating the pytc API.
PythonDataScienceHandbook
Jupyter Notebooks for the Python Data Science Handbook
pythonic-science
Materials for Scientific Programming in Python Course at the UO
restaurant-visitors
Solution to the Kaggle restaurant visitor forecasting
reveal-presentation-template
html and basic directory structure template for (relatively) easily creating reveal.js slideshows
WhirlwindTourOfPython
The Jupyter Notebooks behind my OReilly report, "A Whirlwind Tour of Python"