jenniferliddle

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@wtsi-npg @samtools

Cambridgeshire

http://jennifer.jsquared.co.uk

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samtools

wtsi-npg

Jennifer Liddle's repositories

hydranet

Remote telemetry sending data back to a central server

Language:PythonGPL-3.01 10

arduino

Various bits of arduino code

Language:Arduino010

bambi

Process Illumina instrument data into SAM/BAM/CRAM files.

Language:CAGPL-3.0000

baton

iRODS client programs and API

Language:CGPL-2.0000

bcftools

This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib

Language:CNOASSERTION010

bitsand

Bitsand is an online booking system for live role play events. It was initially written for the Lions faction in the LT system, but it can now be used by any faction or guild.

Language:PHPGPL-3.0000

c-maint

Maintenance scripts used with the htslib/samtools/bcftools repositories

Language:Shell000

core

:house_with_garden: Open source home automation that puts local control and privacy first.

Apache-2.0000

gps_compare

Raspberry Pi python to take in USB GPS data and Bluetooth GPS data and save them

Language:Python010

hts-specs

Specifications of SAM/BAM and related high-throughput sequencing file formats

Language:TeX010

htslib

C library for high-throughput sequencing data formats

Language:CNOASSERTION000

ivar

iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.

Language:C++GPL-3.0000

jsquared

Miscellanous scripts and programs

Language:PythonApache-2.0010

ml_warehouse

Perl DBIx binding to a warehouse housing data from multiple LIM systems

Language:Perl010

ngr2ll

C code to convert from National Grid Reference to Latitude and Longitude

Language:C000

npg_conda

NPG Conda recipes and tools

Language:Shell000

npg_irods

Tools for managing HTS (BAM and CRAM) format files in iRODS.

Language:PerlGPL-3.0000

npg_ml_warehouse

Analysis results loader for the multi-lims warehouse, see ml_warehouse project for the warehouse details.

Language:Perl000

npg_qc

QC checks and metrics for Illumina NGS data

Language:Perl000

npg_seq_pipeline

Processing and analysis of data coming from Illumina sequencing machines

Language:Perl000

npg_tracking

WTSI Illumina sequencing instruments (HiSeq, MiSeq, GA) tracking

Language:Perl000

p4

Process and Pipe Pipeline Panacea

Language:Perl010

pb_calibration

Filter and calibration programs for Illumina BAM files

000

perl-irods-wrap

Perl iRODS Client Wrapper Library

Language:Perl000

remote_antenna_tuner

Pi Pico W providing a web page controlling stepper motors connected to a remote manual ATU

GPL-3.0000

samtools

Tools (written in C using htslib) for manipulating next-generation sequencing data

Language:CNOASSERTION010

samtools_container

Scripts to create a docker container for samtools

Language:Shell000

testRange

python code to steer an az-el antenna and record sign al levels

Language:Python000

wr

High performance Workflow Runner

Language:GoGPL-3.0000

www.htslib.org

The http://www.htslib.org/ web site

Language:HTML010