Wellcome Sanger Institute - NPG's repositories
npg_seq_pipeline
Processing and analysis of data coming from Illumina sequencing machines
genotyping
Components of the WTSI genotype analysis pipeline.
perl-irods-wrap
Perl iRODS Client Wrapper Library
ml_warehouse
Perl DBIx binding to a warehouse housing data from multiple LIM systems
npg_tracking
WTSI Illumina sequencing instruments (HiSeq, MiSeq, GA) tracking
containers
Singularity and Docker material
logshim-zerolog
logshim-zerolog is a backend using Zerolog for https://github.com/wtsi-npg/logshim
npg-irods-python
Applications for the management of data and metadata in iRODS
samtools_container
Scripts to create a docker container for samtools
build-irods-client-action
GitHub Action providing a custom Docker container in which to build iRODS clients
go-irodsclient
Go iRODS Client
npg_ml_warehouse
Analysis results loader for the multi-lims warehouse, see ml_warehouse project for the warehouse details.
npg_porch_cli
A command-line client to enable communication with the npg_porch API.
npg_seq_common
Utilities for handling NGS data
npg_sequencescape_warehouse
Old sequencescape warehouse: DBIx binding, loader, LIMs driver for st::api::lims