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Javier Díez Pérez (jdiez)

jdiez

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followers

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following

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Company:DS

Location:Spain

Home Page:https://www.linkedin.com/in/javier-d%C3%ADez-p%C3%A9rez-71b17318

Twitter:@e_cume

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Javier Díez Pérez's starred repositories

awesome-python

An opinionated list of awesome Python frameworks, libraries, software and resources.

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pip-tools

A set of tools to keep your pinned Python dependencies fresh.

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joblib

Computing with Python functions.

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mpld3

An interactive data visualization tool which brings matplotlib graphics to the browser using D3.

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scalacheck

Property-based testing for Scala

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drill

Apache Drill is a distributed MPP query layer for self describing data

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adam

ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.

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scikit-bio

scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.

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pysam

Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.

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gffutils

GFF and GTF file manipulation and interconversion

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Will_it_Python

Translating R Data Analyses to Python

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loftee

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MISO

MISO: Mixture of Isoforms model for RNA-Seq isoform quantitation

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Genoverse

HTML5 scrollable genome browser

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lsf-python-api

Location for the LSF Python wrapper for controlling all things LSF

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cell

actor framework for Kombu

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denovogear

A program to detect denovo-variants using next-generation sequencing data.

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bsub

python wrapper to submit jobs to bsub (and later qsub)

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cloneHD

High-definition reconstruction of clonal composition from next-generation sequencing data

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pbcore

A Python library for reading and writing PacBio® data files

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ensembl-variation

The Ensembl Variation Perl API and SQL schema

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clinical-filter

filtering trio-based genetic variants in VCFs for clinical review

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illumiprocessor

pre-process illumina reads

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gff3-pltools

A fast parallel GFF3 parser

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python-lsf

Improved interface for the LSF batch job scheduler

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callability

Comparison of callability in whole genomes vs. whole exoms

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ucd-biocore-galaxy

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2014-handy-dist-computing

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celery-pipelines

Pipelines for Celery

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onboarding

Getting started in the yeolab

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