Giters
mamarjan
/
gff3-pltools
A fast parallel GFF3 parser
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Stargazers:
15
Watchers:
3
Issues:
73
Forks:
5
mamarjan/gff3-pltools Issues
More refactoring wanted!
Updated
12 years ago
Comments count
1
gff3-filter throws exception when field can't be converted to int or float
Closed
12 years ago
Comments count
2
empty operand in filtering expression
Updated
12 years ago
AttributeValue constructors
Updated
12 years ago
Comments count
1
Improve README and docs
Updated
12 years ago
Comments count
1
refactor Record.append_to
Updated
12 years ago
Comments count
5
Include the tools in Galaxy
Updated
12 years ago
Comments count
1
Make rake build the tools by default
Updated
12 years ago
Comments count
2
Numerical comparison for filtering
Closed
12 years ago
Comments count
1
Length of transcripts for filtering
Closed
12 years ago
Comments count
1
Add support for "and" and "or" in filtering on the command line
Closed
12 years ago
Comments count
1
MAN pages for utilities
Closed
12 years ago
Comments count
1
gff3-ffetch segfaults
Closed
12 years ago
Comments count
2
A tool for correctly grouping all records into features
Closed
12 years ago
Tool for grouping features and output them in JSON format
Closed
12 years ago
JSON output
Closed
12 years ago
Comments count
2
GFF3 to JSON tool
Closed
12 years ago
Comments count
1
Output only selected fields in a table format
Closed
12 years ago
Comments count
2
Support for adding a header before the data when selecting columns
Updated
12 years ago
Output in CSV instead of tab delimited columns
Updated
12 years ago
GFF3 to GTF and vice versa
Updated
12 years ago
Comments count
1
GTF support
Closed
12 years ago
Comments count
2
Improve validation speed
Closed
12 years ago
Comments count
2
A tool for sorting GFF3 files
Updated
12 years ago
Filtering features
Updated
12 years ago
Records to represent pragmas and comments
Closed
12 years ago
Comments count
1
GDC support
Closed
12 years ago
Comments count
1
Ruby interface for validation of GFF3 files
Closed
12 years ago
Comments count
1
A new repository for the Ruby gem
Closed
12 years ago
Comments count
1
Add toString and recursiveToString for Feature
Closed
12 years ago
A gem for rubygems.org
Closed
12 years ago
Comments count
2
gff3-ffetch to pass FASTA data to output
Closed
12 years ago
Comments count
1
count-features utility too slow
Closed
12 years ago
Comments count
1
A tool for sorting GFF3 files
Updated
12 years ago
Windows binaries
Updated
12 years ago
Packaging for Ubuntu 32 and 64 bit
Closed
12 years ago
Comments count
4
Docs
Closed
12 years ago
Comments count
1
New name
Closed
12 years ago
Comments count
1
Ruby interface for filtering GFF3 files
Closed
12 years ago
& and , have special meaning in attributes field
Closed
12 years ago
Comments count
2
Try re-implementing the FeatureCache using built-in associative arrays
Updated
12 years ago
Basic GFF3 output in D
Closed
12 years ago
Comments count
2
Move fasta stuff in gff3.d
Closed
12 years ago
Comments count
1
replace_url_escaped_chars() too slow
Closed
12 years ago
Comments count
11
Benchmark tool seg-fault
Closed
12 years ago
Comments count
12
Too many files starting with gff3
Closed
12 years ago
A utility for benchmarking the parser
Closed
12 years ago
Refactor RecordRange
Closed
12 years ago
Comments count
1
Validation of record formatting should be lazy
Closed
12 years ago
Move validation out into its own module
Closed
12 years ago
Comments count
1
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