jdeschamps / pyTrackMateXML

For opening ImageJ TrackMate .xml files with python.

pyTrackMateXML

For opening ImageJ TrackMate .xml files with python. Enables users to follow intensity traces based on TrackMate tracking results.

Alternative options are found here.

TrackMate

From: https://imagej.net/TrackMate

TrackMate is available through Fiji and is based on a publication. If you use it successfully for your research please be so kind to cite the authors work: Tinevez, JY.; Perry, N. & Schindelin, J. et al. (2017), "TrackMate: An open and extensible platform for single-particle tracking.", Methods 115: 80-90, PMID 27713081 (on Google Scholar).

Example

See this Jupyternotebook