jdeschamps

EMU

A Micro-Manager plugin that loads easily reconfigurable user interfaces.

EMU-guide

Guide to EMU, a Micro-Manager plugin to load easily reconfigurable user interfaces.

htSMLM

An EMU plugin to control a localization microscope in Micro-Manager and perform unsupervised imaging.

MM-ownAdapters

Custom Micro-manager device adapters

pyTrackMateXML

For opening ImageJ TrackMate .xml files with python.

i2kconference2024

I2K Conference Website

micro-manager

Microscope control and image acquisition integrated with ImageJ.

AcqTest

Playground to test Micro-Manager acquisitions

bioimage.io

Website for the BioImage Model zoo -- a model zoo for bioimage analysis.

blik

Blik is a python tool for visualising and interacting with cryo-ET and subtomogram averaging data.

careamics.github.io

clairvoyant

Software designed to identify and monitor social/historical cues for short term stock movement

compare-metrics

core-bioimage-io-python

Python libraries for loading, running and packaging bioimage.io models

cryohub

IO hub for Cryo-EM, Cryo-ET and subtomogram averaging data.

DenoiSeg_fiji

DL_TensorFlow_PyTorch

imglib2-algorithm

Image processing algorithms for ImgLib2

imglib2-roi

Regions of interest (ROIs) and labelings for ImgLib2

micro-manager.github.io

Micro-Manager website source

mm2-das

mmCoreAndDevices

The c++ code at the core of the Micro-Manager project.

pydev-guide.github.io

Guide to python package development for scientists

pydev-tutorial

pyrepo-copier

Template for creating a new python repository

signal2html

Export a Signal backup to pretty HTML

signalbackup-tools

Tool to work with Signal Backup files.

simsim

spec-bioimage-io

Specification for the bioimage.io model description file.

VeraCrypt

Disk encryption with strong security based on TrueCrypt