jcrudy

jax

Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more

focalboard

Focalboard is an open source, self-hosted alternative to Trello, Notion, and Asana.

py-spy

Sampling profiler for Python programs

bolt

10x faster matrix and vector operations

brax

Massively parallel rigidbody physics simulation on accelerator hardware.

SOTA-MedSeg

SOTA medical image segmentation methods based on various challenges

git-subtree

An experimental alternative to the git-submodule command. Merges and splits subtrees from your project into subprojects and back.

pathos

parallel graph management and execution in heterogeneous computing

diffrax

Numerical differential equation solvers in JAX. Autodifferentiable and GPU-capable. https://docs.kidger.site/diffrax/

awesome-transformers-in-medical-imaging

A collection of resources on applications of Transformers in Medical Imaging.

research-contributions

Implementations of recent research prototypes/demonstrations using MONAI.

aioprocessing

A Python 3.5+ library that integrates the multiprocessing module with asyncio

multiprocess

better multiprocessing and multithreading in Python

TIGRE

TIGRE: Tomographic Iterative GPU-based Reconstruction Toolbox

nnDetection

nnDetection is a self-configuring framework for 3D (volumetric) medical object detection which can be applied to new data sets without manual intervention. It includes guides for 12 data sets that were used to develop and evaluate the performance of the proposed method.

transforms3d

3 dimensional spatial transformations

vindr-lab

A Data Platform for Medical AI that enables building high-quality datasets and algorithms with lean process and advanced annotation features.

spatial-transformer-tensorflow

🐝Tensorflow Implementation of Spatial Transformer Networks

aleph_star

Reinforcement learning with A* and a deep heuristic

CEAL-Medical-Image-Segmentation

Active Deep Learning for Medical Imaging Segmentation

accel-sim-framework

This is the top-level repository for the Accel-Sim framework.

FreeSims

Open source engine used for The Sims

MRIcroGL

v1.2 GLSL volume rendering. Able to view NIfTI, DICOM, MGH, MHD, NRRD, AFNI format images.

openvino_tensorflow

OpenVINO™ integration with TensorFlow

auction-gym

AuctionGym is a simulation environment that enables reproducible evaluation of bandit and reinforcement learning methods for online advertising auctions.

ginkgocadx

Advanced DICOM viewer

kimimaro

Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)

TomoPhantom

Software to generate 2D/3D/4D analytical phantoms and their Radon transforms (parallel beam) for image processing

itkOBBLabelMap

An ITK external module which extends the LabelMap to include Oriented Bounding Box attributes.

SimplePhantomToolkit