MIC-DKFZ / nnDetection

nnDetection is a self-configuring framework for 3D (volumetric) medical object detection which can be applied to new data sets without manual intervention. It includes guides for 12 data sets that were used to develop and evaluate the performance of the proposed method.

MIC-DKFZ/nnDetection Issues

[Question]AttributeError: 'NoneType' object has no attribute 'glob'
Updated 7 days ago2
When is plan_inference.pkl generated?
Updated 7 days ago2
Images
Updated 9 days ago2
Preprocessing gets stuck with multiprocessing
Updated 13 days ago4
| WARNING | nndet.core.boxes.nms:<module>:26 - nnDetection was not build with GPU support!
Updated 16 days ago6
How to change the parameter value of this Anchor in the pkl file
Updated 18 days ago1
[Question] Defining test_labels and target_class for custom dataser
Updated 18 days ago6
ERROR while preprocessing
Updated 20 days ago8
[Question] Issues with preprocessing a RibFrac-like dataset
Updated 22 days ago6
[Bug] There is no scripts direction in project Task025_LymphNode
Updated 24 days ago
About adding LNDb chest CT scan images for nodule detection training
Updated a month ago1
Parameter that was used to control sensitivity versus false positive per image plot
Closed a month ago3
[Question]Training doesn't start or is stuck, stops at "using pin_memory on device 0"
Closed a month ago6
[Question] Negative Loss
Updated a month ago11
[Question] Installation question
Closed a month ago5
Handling duplicate nodules after detection.
Closed a month ago3
Run nnDetection on Cuda 12
Closed a month ago3
[Bug]Issues occurred while exporting segmentation results during inference
Updated 2 months ago1
[Question] RibFrac folder name
Updated 2 months ago1
[Question] Defining "test_labels" and "target_class" for custom dataset.json
Closed 2 months ago1
Evaluation on independent test set
Closed 2 months ago3
[Question] Error about numpy and nevergrad version?
Closed 2 months ago4
[Question]About the result of Task021
Closed 2 months ago7
[Question] The accuracy issue in reproducing the nndetection algorithm
Closed 3 months ago3
coordinates of bounding box of nodules
Closed 3 months ago3
Custom datatset prepare
Closed 3 months ago3
issues related to resolution at which nnDetection training is to be carried out
Closed 3 months ago3
[Question]
Closed 4 months ago
[Question]During the prediction process, a command that loads only "model_best.ckpt" cannot be executed by command
Closed 4 months ago3
[Question]Can data enhancement be turned off during prediction？
Closed 4 months ago4
[Question]Problem for server interruption, training task to continue
Closed 4 months ago4
[Question]About loss
Closed 4 months ago3
Questions regrdaing some parameters of control in v001.yaml
Closed 4 months ago3
[Question]
Closed 4 months ago3
[Question] NVIDIA GeForce RTX 4080 GPU is not yet supported in the Docker
Closed 4 months ago3
The dataset that is to be used for say Rib Fracture detection
Closed 4 months ago3
About multi class dataset
Closed 4 months ago9
Prepare labels for a custom 3D dataset
Closed 4 months ago9
Relevance of masks in training a nnDetection model for nodule detection
Closed 4 months ago4
There might be a bug in the norm_schemes.
Closed 4 months ago3
Training Parameter
Closed 4 months ago3
[Question] Pretrained models availability
Updated 4 months ago1
[Question] Threading error after last training epoch
Updated 4 months ago9
problem when install on RTX3090
Closed 4 months ago7
[Question]Two doubts about the Test Pool and its evaluation results in the paper of nnDetection
Closed 4 months ago2
Significant Change in Epoch Time with Dataset Size
Updated 4 months ago3
[Question] Soft positive label or label smoothing
Closed 5 months ago2
[Question] Training doesn't start correctly
Closed 5 months ago
[Question] Regarding nnDetection was not build with GPU support!
Closed 6 months ago2
[Question] Issues locating dataset using Docker
Closed 7 months ago1