jcfr / SlicerTrack

Module for 3D Slicer providing tracking tools and displacement visualizations

SlicerTrack

SlicerTrack is a 3D Slicer extension designed for easy target tracking of a ROI as it moves through a set of time-series medical images.

DISCLAIMER: This software is not intended for clinical use.

Directory Tree Description

Track

• Main SlicerTrack module directory

TrackingDataProcessor

• Legacy target tracking implementation in C++

Track/Data

• Sample medical image data to be used with SlicerTrack

Tack/Resources

• Holds various resource files that may be used by SlicerTrack

Quick Setup Instructions

1. To access the module within your 3D Slicer installation you must first make the module available to 3D Slicer. Open 3D Slicer and click:

   Edit -> Application Settings -> Modules

   Now add the path to the Track folder within the Additional module paths selection box

   • Hint: Click on the >> button to show the Add button
   • Ensure to add the path to SlicerTrack/Track
   • After the path is added, the program will restart

2. Reopen 3D Slicer and click on the module selection dropdown menu and find the SlicerTrack module under:

   Tracking -> Track

3. Use the input selectors to import the sample data from the Track/Data folder:

   • Cine Images Folder : Track/Data
   • Segmentation File : Track/Data/Segmentation.mha
   • Transforms File : Track/Data/Transforms.csv

4. Press the Play button to begin playback

Extension Development

See the dev wiki for SlicerTrack development information.