jburos

bayesNMF

Testing bayesNMF code from the Broad

cmdstan-wrapper

My current setup for using stan (cmdstan wrapper for R)

r-ladies-sir-model

rcmdstan_stannis

R package to fit stan models using cmdstan, via stannis

2024-02-level-up-docs

academic-kickstart

Easily create a beautiful website using Academic and Hugo

another-biostats-blog

My personal blog

api_jwt

This Python library is a wrapper around pyjwt to support JWT creation and validation as well as payload handling (scopes, auth level, etc).

arviz

Exploratory analysis of Bayesian models with Python

botor

Reticulate wrapper on 'boto3' with convenient helper functions -- aka "boto fo(u)r R"

brms

brms R package for Bayesian generalized multivariate non-linear multilevel models using Stan

brmstools

Helper functions for brmsfit objects

docker-stan

Dockerfiles with rstan and brms

fcutils

Utilities for working with featurecounts data (RNAseq analysis)

golang

Docker Official Image packaging for golang

hugo-academic

The website designer for Hugo. Build and deploy a beautiful website in minutes :rocket:

n-of-1-sample-size

nginx-autoindex

minimal docker image based on nginx, with `autoindex on;`

plash-bing-photo-of-the-day

rcmdstan

CmdStan wrapper for R (via CmdStanPy)

rdump-example

Example code to illustrate rdump error messages

rnaseq

RNA sequencing analysis pipeline using STAR or HISAT2, with gene counts and quality control

rpy2-r6

rpy2 extension package to faciliate handling of R6 objects

rstan

RStan, the R interface to Stan

rstanarm

snp-imputation-nf

Nextflow script to create the imputation

stannis

Code for effectively dealing with running CmdStan... from R.... because reasons...

tidybayes

Bayesian analysis + tidy data + geoms (R package)

universe

zero_types_paper

Code to reproduce analysis and figures in the Zero Types Paper