jaudoux / kad

K-mer Abundance Database

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KAD - K-mer Abundance Database Build Status

KAD, is a database build with leveldb to store k-mer abundances of RNA-Seq samples.

Installation

KAD depends on rocksdb.

To compile KAD go to src/ directory and run make.

Usage

By default the kad database is located on the working directy under the ".kad" directory.

Use kad index [sample_name] counts.tsv to index the counts from one sample. The counts should be formated as a tabulated file with the kmer sequence in the first column and the count in the second.

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K-mer Abundance Database


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Language:C 63.1%Language:C++ 36.2%Language:Makefile 0.7%