jaudoux

kamix

Index and query k-mer matrices in BGZF

makepipe

A wrapper around Makefile to create beautiful pipelines with reusable bricks and simple YAML config file.

countTags

countTags is a c++ optimized software that counts occurrences of a set of k-mer signatures into a set of FASTQ (possibly gziped) files.

simct

A configurable generator of simulated RNA-Seq data that can emulate any specific biological mechanism and provide robust data sets covering cases such as fusion genes (or fusions).

ariane-et-le-monde

benchct

A qualitative evaluation tool which assess any pipeline results against a simulated dataset to obtain a clear understanding of its performance characteristics in answering a particular biological question.

cello

A string library

cractools-core

dokany

User mode file system library for windows with FUSE Wrapper

fontello

Iconic fonts scissors

jaudoux-beamer-theme

My personal Beamer theme (with Pandoc Interface)

Jellyfish

A fast multi-threaded k-mer counter

jmol-BCD-project

kad

K-mer Abundance Database

kallisto

Near-optimal RNA-Seq quantification

moby

Moby Project - a collaborative project for the container ecosystem to assemble container-based systems

nim-lapper

fast easy interval overlapping for nim-lang

simba-publication-pipeline

Pipeline used to generate SimBa publication results.

slivar

variant expressions, annotation, and filtering for great good.

sole-search

Sole search fork

SVtools

tami

Targeted mutation identification

vimrc

yaggo

Generate command line parser using getopt_long