jasonwong-lab

smk_sv

A snakemake pipeline to call structure variants from ONT data

ERCC2

Scripts for Barbour et al. ERCC2 mutations alter the genomic distribution pattern of somatic mutations and are independently prognostic in bladder cancer

withings_api_dev

Template for flask application to access Withings API

LocusMasterTE_paper

Scripts for figures and results in LocusMasterTE paper

GenomicsWorkshop

LocusMasterTE

Integrating long read sequencing enhances short read-based locus-specific transposable element quantification

HKU-Practical-Bioinformatics

HKU_STEM

HKU STEM Data Science Lab for SARS-CoV2 bioinformatics

genomics-exercise

Genomics exercise from Jason Wong lab @ HKU

TMB

Tumour mutation burden correction

cBioportalDataClawler

Some simple Python scripts to download data files from https://www.cbioportal.org/

RNAseq-analysis-pipeline

This guidebook aims to demonstrate the RNA-seq analysis pipeline and the basics statistical analysis behind Differential Gene expression detection

MMR