jambler24 / GenGraph

A repository for the GenGraph toolkit for the creation and manipulation of graph genomes

jambler24/GenGraph Issues

Need help running the code.
Updated 2 years ago
Incorrect version being displayed.
Updated 3 years ago
[Question] vg versus GenGraph
Updated 3 years ago
[HELP / FEATURE] is it possible to use a single fasta file containing many genomes?
Updated 3 years ago1
No such file or directory: 'globalAlignment_khush.backbone'
Updated 2 years ago10
[BUG?] Error: progressiveMauve_call error: output of progressiveMauve empty
Closed 3 years ago3
NetworkX v2.4 support
Closed 4 years ago2
Running problem
Closed 4 years ago
Gengraph running problem
Updated 3 years ago28
TypeError: set_node_atttributes() missing 1 required positional gengraph argument: 'values'
Updated 4 years ago2
Novice to python
Closed 4 years ago4
Convert / import vg gfa file
Updated 5 years ago
set mauve scratch path
Updated 4 years ago21
Add progressiveMauve path as a flag for gengraphTool.py
Closed 5 years ago1
Work on the ancestral genome function
Closed 4 years ago1
Add support for multiple cores
Closed 4 years ago1
Look into using PyPy
Updated 4 years ago3
deepcopy
Closed 6 years ago1
Sequence recreate check taking too long
Closed 4 years ago1
Substrings of other isolate names as isolate names
Closed 6 years ago1
Remove excess debugging information
Closed 6 years ago1