Jambler's repositories
Genome_stats_tools
This is a collection of tools for getting the required information about a genome out of GFF and fasta files
bac_pangenome
Nextflow pipeline for bacterial pangenomics
bacterial_large_indel_detection
This tool allows for the detection of large deletions in haploid organisms such as bacteria.
django-governance-platform
A Django application to manage tickets for an internal helpdesk. Formerly known as Jutda Helpdesk.
git_lecture_old
A repo containing materials for the lecture on git
h3agwas
GWAS Pipeline for H3Africa
Holmes
Repository for the Holmes NGS analysis platform
Holmes_Docker
The docker install files for Holmes
Holmes_v1
New home for Holmes
MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
MultiQC_TestData
Test data for MultiQC. See https://github.com/ewels/MultiQC
sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
TEAR
A repository for the Transposable Element Analysis for RIP (TEAR) tool.
uct-srst2
MLST using srst2, implemented in Nextflow
vcf2fasta
A python tool to convert a vcf file to an aligned fasta file