jakeyeung / Circadian4Cseq

Circadian 4CSeq processed data and scripts. For plotting circadian mRNA expression across tissues, see https://github.com/jakeyeung/TissueCiradianAnalysis

Circadian4Cseq

The Circadian4Cseq package contains data and functions for analyzing chromatin conformation data over the 24-hour day, published in Mermet, Yeung 2018 (http://genesdev.cshlp.org/content/early/2018/03/23/gad.312397.118) ## Installation

# devtools::install_github("jakeyeung/Circadian4Cseq")

It is also useful to install the CircadianRNASeq package in https://github.com/jakeyeung/TissueCiradianAnalysis ## Tutorial for loading and plotting data Check out the tutorial in load_and_plot_data.md

# data can be loaded using data() or load("data/path_to_RData_object")
# data(counts.long.merged.Robj)

Tutorial for making movies of chromatin conformation over the 24-hour day

Check out tutorial in animate_circadian_4cseq_again.md