jakeyeung

Jake Yeung's repositories

alternative-splicing

Investigating alternative splice events, their trans-acting factors and its effect on protein-interactions.

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sortchicAllScripts

All processing and downstream scripts used in sortChIC

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Circadian4Cseq

Circadian 4CSeq processed data and scripts. For plotting circadian mRNA expression across tissues, see https://github.com/jakeyeung/TissueCiradianAnalysis

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RFunctions

Useful R functions I keep reusing over the years

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scchic-functions

Functions used in downstream scchic analysis

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SleepDepAnalysis

Statistical model, data, and functions for analyzing RNA-seq integrated with EEG-data to link sleep-wake behavior to gene expression dynamics.

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sortchicAnalysis

R package containing processed data and analysis vignettes for sortChIC

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Statistical model, data, and functions to analyze circadian gene expression across tissues. Clone of https://jakeyeung@bitbucket.org/jakeyeung/tissuecircadiananalysis.git but removed files >100MB (github limit)

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GPJax

Gaussian processes in JAX fork.

Language:PythonApache-2.0000

AnnotateCelltypes

Annotate celltypes from a reference. Input raw count data.

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automation

Quick automation scripts for saving memory in brain

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ChromatinDynamics2020-Analysis

Analysis corresponding to the paper "Dynamics of Chromatin Accessibility in Cortical Interneurons"

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CV

Curriculum vitae of Jake Yeung

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GOFunction

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/GOFunction.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=GOFunction.

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