jacodela / bsp

Code for reproducing the results of the paper "Body size phenotypes comprehensively assess cardiometabolic risk and refine the association between obesity and gut microbiota" (de la Cuesta-Zuluaga et al. 2017, International Journal of Obesity, doi: 10.1038/ijo.2017.281)

bsp

© Vidarium, 2017

This folder contains the necessary files to replicate the results presented in the following paper:

de la Cuesta-Zuluaga J, Corrales-Agudelo V, Carmona JA, Abad JM, Escobar JS. Body size phenotypes comprehensively assess cardiometabolic risk and refine the association between obesity and gut microbiota. International Journal of Obesity. DOI: 10.1038/ijo.2017.281

Microbio_BSP_analyses.R: R script for reproducing the analyses presented in the paper.

lefse_abnormalities*.txt: datasets to run Lefse (https://huttenhower.sph.harvard.edu/galaxy/)

read.newick.R: source code from read.newick, only necessary if you have problems with the phytools package

All other files are necessary for running Microbio_BSP_analyses.R.

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