j23414 / final_project_jenchang

final_project_jenchang

File Descriptions

• script.Rmd Project Proposal
• draft_report.Rmd Draft of Report
• final_report.Rmd Final Report
• my_app Shiny app: allows user to select a module and see a word cloud of the gene descriptions in that module

Data required: within a folder named "data"

• gene_median.csv Contains the transcription data
• gene_eco_desc.csv Contains the keggid, gene, and gene description
• gene_pathid_pathdesc.csv Contains the keggid, pathwayid, and pathway description
• gen_cluster_des.txt Contains the gene, cluster, and gene description, necessary for shiny app