Jennifer Chang's repositories
compare_workflows
Compare snakemake with nextflow and CWL, probably should combine this with desc_workflow repo
.github
Diving into history
basic_website
Review html, css, javascript so I understand underlying tech behind hugo, jekyll, etc
flu_forecasting_reproducibility
Reproduce analysis with recent data
iav-s
glance at new api
ingest_nf
A simplified pathogen ingest
j23414.github.com
Online programming portfolio
mini_nf
Draft options for nextflow modularization of nextstrain
nextclade_dengue
Attempt to create a nextclade_dengue dataset
nextclade_template_nf
Draft of creating a nextclade dataset
nipah
generic update
pathogen_nf
Generic calls to existing nextstrain pathogen pipelines
pdm1957
Pandemic of 1957
PR_list
Mostly tracking PRs
representative_tree
Full tree then subsample
sir_models
Test mathjax
test_convert_v3
Test conversion of to v3
test_minimal_dataset
test different layers
test_site
For Fun
validate_titer_parse
Temporary repo to document validation
wdl_pathogen_build
Will be sunset in favor of nextstrain/ncov/workflow/wdl
WNV_tree
Glance at WNV trees published in literature