iskandr

fancyimpute

Multivariate imputation and matrix completion algorithms implemented in Python

parakeet

Runtime compiler for numerical Python

bcb731

Defense Against the Dark Arts

deep-learning-for-bio

Deep Learning for Biology

attention-in-neural-networks

Code for Miami ML meetup on Attention in Neural Networks

ml-experiments

Experiments with Jax, PyTorch and variable length sequence models

simple-somatic-variant-calling

A simple genomics "pipeline" implemented via shell scripts

image-experiments

interval

Conversion between genomic interval/coordinate systems

msmhc

Looking for "dark matter" of the MHC ligandome in mass specta

neoantigens

🏺 Exploring novel tumor epitope identification

yoclo

You Only Command Line Once

bbn963-transcriptome

Analysis of BBN963 PacBio Iso-Seq

contamination

darkarts.bio

elmiat

Electronic Lady Macbeth In A Tree

example-repo

Globular grammigrams

jekyllthemes

A directory of the best-looking themes for Jekyll blogs

lettersfromkiev.com

Aron Zakon's 1941 Letters from Kiev

liguus

Experiments in accretive rendering

lit-parrot

Implementation of the StableLM/Pythia/INCITE language models based on nanoGPT. Supports flash attention, LLaMA-Adapter fine-tuning, pre-training. Apache 2.0-licensed.

mhcflurry-rare-alleles-tcell

ncov2019

nextclade

Assign SARS-CoV-2 clades in the browser

raft-experiments

randopep

Random peptide generation

rust-experiments

scalarmix

Vectorized implementation of scalar two component gaussian mixture models

ttf-mutational-signature

weave

Experiments with digital fiber arts