isinaltinkaya / vcfgl_benchmarking

Analysis and benchmarking pipeline used in:

vcfgl: A flexible genotype likelihood simulator for VCF/BCF files

https://www.biorxiv.org/content/10.1101/2024.04.09.586324v1

Repository Structure

• benchmarking: Contains the scripts used for memory and speed benchmarking.

• plots: Includes R scripts for data processing and visualization, as well as the generated plots illustrating the benchmarking results.

• simulation: Snakemake workflow used for the simulations and analyses described in the study.