Baohong Zhang's repositories
cellxgene_VIP
Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also performs differential gene expression analysis and provides a Command Line Interface (CLI) for advanced users to perform analysis using python and R.
Quickomics
Quickomics: exploring omics data in an intuitive, interactive and informative manner
scRNAsequest
scRNASequest: an ecosystem of scRNA-seq analysis, visualization and publishing
bioInfograph
bioInfograph: an online tool to design and display multi-panel scientific figure interactively
awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
python-cheatsheet
Comprehensive Python Cheatsheet
CSFinMS
Integrated single cell transcriptomics of cerebrospinal fluid cells in early Multiple Sclerosis
rpy2
Interface to use R from Python