Baohong Zhang's repositories

cellxgene_VIP

Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also performs differential gene expression analysis and provides a Command Line Interface (CLI) for advanced users to perform analysis using python and R.

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Quickomics

Quickomics: exploring omics data in an intuitive, interactive and informative manner

scRNAsequest

scRNASequest: an ecosystem of scRNA-seq analysis, visualization and publishing

OmicsView

OmicsView: omics data analysis through interactive visual analytics

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bioInfograph

bioInfograph: an online tool to design and display multi-panel scientific figure interactively

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cellxgene

An interactive explorer for single-cell transcriptomics data

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awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

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HSCTGFB

STAT3 activation is central to TGF-β1 mediated primary human hepatic stellate cell activation

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ZSF1

High resolution molecular and histological analysis of renal disease progression in ZSF1 (fa/fa cp) rats, a model of type 2 diabetic nephropathy

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python-cheatsheet

Comprehensive Python Cheatsheet

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CSFinMS

Integrated single cell transcriptomics of cerebrospinal fluid cells in early Multiple Sclerosis

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rpy2

Interface to use R from Python

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