inodb

sufam

Super sensitive mutation validator, uses sam/bam and vcf

cyftools

CLI tools for CyCIF

genome-nexus-annotation-pipeline

Library and tool for annotating MAF files using Genome Nexus Webserver API

cbioportal

cbioportal-frontend

genome-nexus

REST API for Annotation and Interpretation of Genetic Variants in Cancer

alexsigaras

About section for Alexandros Sigaras

annotation-tools

tools to allow annotation of vcf and maf files from a number of centers and merging the results

cbioportal-docker-compose

Run cBioPortal using Docker Compose

cbioportal-frontend-archive-1

Archived version of cbioportal-frontend before rewriting history to remove large objects

cBioPortalData

Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment

cbioportalR

R package to wrap cBioPortal's API to pull data from public or private cBioPortal databases

codenames

Play codenames online

datahub

A centralized location for storing curated data ready for inclusion in cBioPortal.

dotfiles

Dotfiles I use. Most of it is ripped from other people. Unfortunately I forgot the original source in some cases. Notify me if you want credits.

genome-nexus-frontend

Frontend for Genome Nexus :tada: (alpha)

genome-nexus-importer

Import data into MongoDB for use by https://github.com/genome-nexus/genome-nexus/

hdash

Command line tool for generating HTAN dashboard.

hotspots

Identifying recurrent mutations in cancer

hsim

Command line tool for generating simulated HTAN metadata for the HTAN Data Portal.

htan-artist

A NextFlow pipeline to run image rendering process to generate resources for the HTAN Portal.

HTAN-Data-Ingress-Docs

A draft of the HTAN dataset ingress workflow - to share with tester teams and early adopters.

ino.bio

My personal blog

inodb

Github profile

jsii

jsii allows code in any language to naturally interact with JavaScript classes. It is the technology that enables the AWS Cloud Development Kit to deliver polyglot libraries from a single codebase!

minerva-lib-python

Minerva Python Library

oncokbR

Annotate mutation, copy number alteration and structural variant data in R using oncoKB Annotation API

schematic

Package for biomedical data model and data ingress management

shpe

test-codespaces