iimog

Markus J. Ankenbrand's starred repositories

yt-dlp

A feature-rich command-line audio/video downloader

Language:PythonUnlicense77531 475 7386

gum

A tool for glamorous shell scripts 🎀

Language:GoMIT17425 55 316

rough-notation

Create and animate hand-drawn annotations on a web page

Language:TypeScriptMIT8435 46 49

docopt

Create *beautiful* command-line interfaces with Python

Language:PythonMIT7909 162 413

omni

The all-in-one tool to supercharge your productivity ⌨️

Language:JavaScriptMIT7018 35 98

nnUNet

Language:PythonApache-2.05427 77 1918

statsforecast

Lightning ⚡️ fast forecasting with statistical and econometric models.

Language:PythonApache-2.03752 38 316

zsh-vi-mode

💻 A better and friendly vi(vim) mode plugin for ZSH.

Language:ShellMIT2973 15 232

mitaka

A browser extension for OSINT search

Language:TypeScriptMIT1374 43 111

TotalSegmentator

Tool for robust segmentation of >100 important anatomical structures in CT and MR images

Language:PythonApache-2.01328 26 300

dcm2niix

dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC

Language:C++NOASSERTION834 39 659

InnerEye-DeepLearning

Medical Imaging Deep Learning library to train and deploy 3D segmentation models on Azure Machine Learning

Language:PythonMIT546 32 296

lesspipe

lesspipe - display more with less

Language:PerlGPL-2.0456 17 90

bakta

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

Language:PythonGPL-3.0419 14 208

RadImageNet

RadImageNet, a pre-trained convolutional neural networks trained solely from medical imaging to be used as the basis of transfer learning for medical imaging applications.

Language:PythonMIT335 8 18

eop

The Elevation of Privilege Threat Modeling Game

Language:Rich Text Format289 19 3

hi-ml

HI-ML toolbox for deep learning for medical imaging and Azure integration

Language:PythonMIT248 10 318

SibeliaZ

A fast whole-genome aligner based on de Bruijn graphs

Language:C++NOASSERTION137 7 49

BioImageAnalysisNotebooks

Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more

Language:CoolBSD-3-Clause115 7 21

fastMONAI

Simplifying deep learning for medical imaging

Language:Jupyter NotebookApache-2.092 7 9

bionumpy

Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/

Language:PythonMIT87 3 22

kspace-explorer

⚕️ An educational tool to visualise k-space and aid the understanding of MRI image generation

Language:Python72 5 5

quarto-roughnotation

An extension that uses the roughnotation javascript library to add animated annotations to revealjs documents.

Language:JavaScript57 3 7

devbio-napari

Language:PythonBSD-3-Clause41 4 33

image-diff

CLI tool for comparing images

Language:PythonApache-2.034 2 5

tnia-python

A collection of useful python utilities from True North Intelligent Algorithms

Language:Jupyter NotebookBSD-3-Clause27 6 2

misas

Model Interpretation through Sensitivity Analysis for Segmentation

Language:Jupyter NotebookMIT6 3 9

hesperos

Napari plugin

Language:PythonBSD-3-Clause4 1 1

city-knowledge-contest

A PvP online game to get to know your city better.

Language:GoMIT4 2 10

minitv

Alignment frontend for AliTV

Language:PythonGPL-3.03 20