chloroExtractorTeam's repositories
fastq-shuffle
A shuffle program for FASTQ files
fast-plast_docker
A docker solution for Fast-Plast (https://github.com/mrmckain/Fast-Plast)
GetOrganelle_docker
A docker solution for GetOrganelle (https://github.com/Kinggerm/GetOrganelle)
IOGA_docker
A docker solution for IOGA (https://github.com/holmrenser/IOGA)
NOVOPlasty_docker
A docker solution for NOVOPlasty (https://github.com/ndierckx/NOVOPlasty)
ORG.Asm_docker
A docker solution for ORG.Asm (https://git.metabarcoding.org/org-asm/org-asm)
screening_container
This container is used to screen for new chloroplasts
simulate
Protocol to generate simulated sequence reads for evaluation of chloroExtractor
annoBTD
Annotation software for Verdant.
bats
Bash Automated Testing System
chloroExtractor-dockerbase
Docker base image for our chloroExtractor Docker container
chloroExtractor-testsuite
Tests for our chloroExtractor
chloroExtractorLogo
All stuff concerning the logo of our chloroExtractor
chloroplast_landscape
Chloroplast landscape for different plant species
docker
Build scripts for docker images to run chloroExtractor
fastg-parser
Parses the FastG files and extracts target assemblies