Iara Souza's repositories
dockstore-tool-bamstats
A repo for the BAMStats command, used as the tutorial for Dockstore
essential_genes_paper
Repository for the ancestry analysis of essential genes in eukaryotes
fastqc-parser
parse FASTQC results
final-project-IMBD
Applying classification algorithms to identify essential genes in model organisms.
gnomad-extractor
simple tool to parse VCF from gnomad project
mdd
Sex-specific transcriptional alteration profile of MDD
MicroarrayMethods
Functions to simplify microarray analysis
parametric-simulation
Script to evaluate MLE performance based on Monte Carlo simulations
gene_exp_tcruzi
Gene expression analysis for T. Cruzi
intro-single-cell
Introduction to single-cell RNA-seq analysis
sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
simplealignment
Just a pipeline for STAR alignment
tab-projeto-final
Nextflow RNA-Seq pipeline with a filtering step
TABIII-ex2
Exercício 2 da disciplina de Tópicos Avançados em Bioinformática
TABIII-ex3
Exercício 3 da disciplina de Tópicos Avançados em Bioinformática III
TABIII-hello
Exercício 1 da disciplina de tópicos avançados em bioinformática III
test-dataset
A dataset to test the final project pipeline
training
Nextflow training material
transcriptogramer
R package for transcriptional analysis based on transcriptograms