Hurwitz Lab's repositories
megahit
Stampede implementation of MEGAHIT
Language:RustGPL-3.0000
centrifuge
Run Centrifuge on Stampede
trim-galore
Biocontainer Trim Galore for Stampede2
Language:RustMIT000
stampede2-template
Template for creating pipelines on TACC stampede cluster.
Language:PythonGPL-3.0000
fastq-dump
Run fastq-dump on Stampede2
Language:Makefile000
centrifuge-bubble
Stampede app for creating bubble plots from Centrifuge TSV files
Language:Python000
Language:Rust000
Language:Rust000
trimmomatic
Trimmomatic batch
Language:RustMIT000
Language:Rust000
fraggenescan
FragGeneScan
Language:MakefileMIT000
sim-plots
Sequence similarity plots in D3
Language:JavaScriptMIT000
ebi_pipeline
EBI Pipeline
Language:PythonMIT000
cascade
Containers, workflows, etc.
MIT000
b2_drought
Biosphere2 Drought Experiment
Language:Jupyter NotebookMIT000
mezcal
Agave interface
MIT000
ohana-blast
Ohana BLAST
Language:PythonMIT000
agave-cli
The Tapis CLI
Language:ShellNOASSERTION000
pathogens_in_clinically_relevant_samples
Scripts for FN analysis
Language:Jupyter Notebook000
krakenuniq
Stampede KrakenUniq
Language:PythonMIT000
kraken_centrifuge
Centrifuge on Kraken dbs
Language:ShellMIT000
biosys-analytics
BE434/535 Biosystems Analytics
metakallisto
Singularity container for metakallisto
Language:MakefileMIT000
MIT000
raxml
RaxML
Language:Python000
traitar
Singularity/TACC implementation of traitar
Language:Makefile000
r-oce
R/Oce image
Language:PythonMIT000
biosys-analytics-1
BE434/535 Biosystems Analytics
MIT000
predictome
Prediction of metagenomic sample biome from Interpro and GO
Language:PythonMIT000
tax-e
Taxonomy of ecosystems
Language:RMIT000