Hurwitz Lab

elm-imicrobe-spa

appetizer

Create the app.json for Stampede

planet-microbe-functional-annotation

phage_detection_benchmarks

Code used to benchmark metagenomic phage detection tools.

WGCNA-of-Type-II-Diabetic-Skin

WGCNA of Type II Diabetic Skin

biosystems-analytics-2020

434/534 Biosystems Analytics course at the University of Arizona

centrifuge

Run Centrifuge on Stampede

mash

node-imicrobe

Node app server for iMicrobe data

planet-microbe-app

Planet Microbe - Semantic search across ‘omics, environmental, and physiochemical data layers.

planet-microbe-datapackages

Data packages for the Planet Microbe project

hurwitzLab

R package with color palettes for HurwitzLab

b2_web

B2 Web Interface (back/frontend)

be434-Spring2024

eggnog_mapper

EggNog Mapper

hurwitzlab.github.io

Website for the Hurwitz Lab

imicrobe-16SrDNA-OTU-Clustering

A CyVerse pipeline for clustering 16S rDNA data.

imicrobe-landing-page

Static HTML/CSS for iMicrobe landing page

iqtree

IQ-TREE

megahit

Stampede implementation of MEGAHIT

plan-b

Job Service

planet-microbe-frictionless-data-package-paper

Repository with all source code and data to generate the figures from the manuscript about the Planet Microbe Frictionless Data Packages.

planet-microbe-ontology

planet-microbe-scripts

Planet Microbe scripts and examples

planet-microbe-semantic-web-analysis

ppr_meta

PPR Meta

purloiner

Annotate datasets with PURLs and such

Simulated_metagenomes_generator

Pipeline to generate simulated metagenome of known composition using InSilicoSeq

viral_hunting_pipeline

Pipeline for assembly of metagenomes and retrieval of viral contigs

WoundDB_app

Shiny_App for the Wound DB