Hurwitz Lab's repositories
phage_detection_benchmarks
Code used to benchmark metagenomic phage detection tools.
WGCNA-of-Type-II-Diabetic-Skin
WGCNA of Type II Diabetic Skin
biosystems-analytics-2020
434/534 Biosystems Analytics course at the University of Arizona
node-imicrobe
Node app server for iMicrobe data
planet-microbe-app
Planet Microbe - Semantic search across ‘omics, environmental, and physiochemical data layers.
planet-microbe-datapackages
Data packages for the Planet Microbe project
hurwitzLab
R package with color palettes for HurwitzLab
be487-fall-2024
metagenomics 487/587
chapel_metag_pipeline
metagenomics workflow using chapel
eggnog_mapper
EggNog Mapper
hurwitzlab.github.io
Website for the Hurwitz Lab
imicrobe-16SrDNA-OTU-Clustering
A CyVerse pipeline for clustering 16S rDNA data.
imicrobe-landing-page
Static HTML/CSS for iMicrobe landing page
planet-microbe-frictionless-data-package-paper
Repository with all source code and data to generate the figures from the manuscript about the Planet Microbe Frictionless Data Packages.
planet-microbe-scripts
Planet Microbe scripts and examples
Simulated_metagenomes_generator
Pipeline to generate simulated metagenome of known composition using InSilicoSeq
viral_hunting_pipeline
Pipeline for assembly of metagenomes and retrieval of viral contigs
WoundDB_app
Shiny_App for the Wound DB