Huidong Chen's repositories
scATAC-benchmarking
Benchmarking computational single cell ATAC-seq methods
Docker_STREAM
The Docker file for STREAM package https://github.com/pinellolab/STREAM
academic-kickstart
Easily create a beautiful website using Academic and Hugo
bioconda-recipes
Conda recipes for the bioconda channel.
bioinformatics_scripts
scripts for bioinformatics analysis
bsub_jupyter
Connect to a LSF main node directly or trough a ssh jump node, launch a jupyter notebook via bsub and open automatically a tunnel. The name of the connection can be used to reestablish the connection later or to terminate it.
competition
Topcoder single-cell trajectory inference competition
Density_Sampling
For a data-set comprising a mixture of rare and common populations, density sampling gives equal weights to selected representatives of those distinct populations.
elpigraph-python
Python implementation of the ElPiGraph algorithm with multi-cpu and gpu support
Gene_Annotation
Scripts used for obtaining gene annotation file
GraphXAI
GraphXAI: Resource to support the development and evaluation of GNN explainers
huidongchen.github.io
personal website https://huidongchen.github.io/
PyTorch-BigGraph
Generate embeddings from large-scale graph-structured data.
rpy2-feedstock
A conda-smithy repository for rpy2.
scikit-posthocs
Pairwise Multiple Comparisons Post-hoc Tests
simba_tutorials
Tutorials for SIMBA (https://github.com/huidongchen/simba)
staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
TI_competition
Trajectory Inference Competition
TI_STREAM
STREAM repo for Topcoder Single-Cell Trajectory Inference Methods challenge https://www.topcoder.com/lp/single-cell