Erqiang Hu's repositories
HPO.db_MPO.db
Locally installed versions of HPO.db and MPO.db
clusterProfiler
:bar_chart: statistical analysis and visualization of functional profiles for genes and gene clusters
enrichplot
Visualization of Functional Enrichment Result
GeoTcgaData
Processed rna-seq data, copy number variation data, and methylation data on GEO and TCGA
BSgenomehpv16
HPV16 genome
multiEnrichment
multi-omic enrichment analysis
aplot
Decorate a plot with associated information
aplotExtra
Creating composite plot using 'aplot'
bulk2space
a spatial deconvolution method based on deep learning frameworks, which converts bulk transcriptomes into spatially resolved single-cell expression profiles
clusterProfiler_protocol
omics data analysis using clusterProfiler ;)
cpgAnnotation
Annotation of CpG site
createKEGGdb
Create KEGG.db Package
dlstats
:arrow_down: download stats of R packages
GOSemSim
:golf:GO-terms Semantic Similarity Measures
MicrobiomeProfiler
:microbe: A shiny package for microbiome functional enrichment analysis
MMINP
Microbe-Metabolite INteractions-based metabolic profiles Predictor
ReactomePA
Reactome Pathway Analysis
rmarkdown-cookbook
R Markdown Cookbook. A range of tips and tricks to make better use of R Markdown.
shinyscholar
A template for creating modular shiny applications that meet academic standards and are reproducible
yulab-smu.github.io
:house: Homepage for YuLab-SMU