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huangl07

huangl07

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sv-callers

Snakemake-based workflow for detecting structural variants in genomic data

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loreta

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FiNGS

Filters for Next Generation Sequencing

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hypo-assembler

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HLAProfiler

Using k-mers to call HLA alleles in RNA sequencing data

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MHCtyping

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CLCA_WGS

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GONE

GONE: Scripts, programs and an example data set

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mummer

Mummer alignment tool

Language:C++License:Artistic-2.0Stargazers:426Issues:0Issues:0

gfatools

Tools for manipulating sequence graphs in the GFA and rGFA formats

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DiscoSnp

DiscoSnp is designed for discovering all kinds of SNPs (not only isolated ones), as well as insertions and deletions, from raw set(s) of reads.

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AMAI

Advanced Melee Artificial Intelligence Mod For Warcraft 3

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LaTeX-OCR

pix2tex: Using a ViT to convert images of equations into LaTeX code.

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geneHapR

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GESLM

Greedy Equivalence Search with Local Modification (GESLM) in GWAS

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pairtree

Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneity. Pairtree focuses on scaling to many more cancer samples and cancer cell subpopulations than other algorithms, and on producing concise and informative interactive characterizations of posterior uncertainty.

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pyclone-vi

Fast method for inferring cancer clonal population structure from SNV data.

Language:PythonLicense:GPL-3.0Stargazers:49Issues:0Issues:0

MMseqs2

MMseqs2: ultra fast and sensitive search and clustering suite

License:GPL-3.0Stargazers:1Issues:0Issues:0

GangSTR

A tool for profiling long STRs from short reads

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microbiomeGWAS

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llama

Inference code for Llama models

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taxa

taxonomic classes for R

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janggu

Deep learning infrastructure for genomics

Language:Jupyter NotebookLicense:GPL-3.0Stargazers:251Issues:0Issues:0

scGWAS

A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest and (2) to construct cellular modules which imply disease-specific activation of different processes.

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MetaXcan

MetaXcan software and manuscript

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PrediXcan

PrediXcan Project

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SCOPE

Scalable population structure inference

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bgt

Flexible genotype query among 30,000+ samples whole-genome

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gff3sort

GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools

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GAG

Generates an NCBI .tbl file of annotations on a genome.

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