Beast code in Giters

Xinyu He's starred repositories

zotero-style

Ethereal Style for Zotero

Language:JavaScriptAGPL-3.03351 10 979

DoubletFinder

R package for detecting doublets in single-cell RNA sequencing data

Language:R389 8 193

omicverse

A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.

Language:Jupyter NotebookGPL-3.0373 5 90

mixcr

MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.

Language:KotlinNOASSERTION321 32 951

CellphoneDB

CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.

Language:Jupyter NotebookMIT315 10 192

pyDelaunay2D

A simple Delaunay 2D triangulation in python (with numpy)

Language:PythonGPL-3.0185 4 7

velocyto.py

RNA velocity estimation in Python

Language:PythonBSD-2-Clause158 13 368

infercnvpy

Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.

Language:PythonBSD-3-Clause128 4 52

cs-first-aid

CS自救指南

93 10

COMMOT

Language:PythonMIT82 1 36

scGSVA

scGSVA: Perform GSVA for single cell RNA seq

Language:RGPL-3.042 2 26

topiary

Predict mutated T-cell epitopes from sequencing data

Language:PythonApache-2.027 14 57

neoantigen-specific-T-cells-NSCLC

Language:R19 1 1

DeepLinc

De novo reconstruction of cell interaction landscapes from single-cell spatial transcriptome data

Language:PythonMIT15 4 5

spider

Language:Python1000

oliveira-stromhaug-melanoma-tcrs-phenotypes

Language:R700

regional-lung-cancer

Language:R500

Rmagic

:exclamation: This is a read-only mirror of the CRAN R package repository. Rmagic — MAGIC - Markov Affinity-Based Graph Imputation of Cells

Language:HTMLGPL-2.02 3 1