hongqin

PythonDataScienceHandbook

Python Data Science Handbook: full text in Jupyter Notebooks

t81_558_deep_learning

T81-558: Keras - Applications of Deep Neural Networks @Washington University in St. Louis

r4ds

R for data science: a book

springer_free_books

Python script to download all Springer books released for free during the 2020 COVID-19 quarantine

ncov

Nextstrain build for novel coronavirus SARS-CoV-2

awesome-agile

Awesome List of resources on Agile Software Development.

covid19

JSON time-series of coronavirus cases (confirmed, deaths and recovered) per country - updated daily

covid19_projections

COVID-19 Projections Using Machine Learning

awesome-adversarial-examples-dl

A curated list of awesome resources for adversarial examples in deep learning

Usiigaci

Usiigaci: stain-free cell tracking in phase contrast microscopy enabled by supervised machine learning

breseq

breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is intended for haploid microbial genomes (<20 Mb). breseq is a command line tool implemented in C++ and R.

PM_COVID

Public Available Code and Data to Reproduce Analyses in "Air pollution and COVID-19 mortality in the United States: Strengths and limitations of an ecological regression analysis."

bioconda-utils

Utilities for building and managing bioconda recipes

sarscov2phylo

Global phylogenies of SARS-CoV-2 sequences

uc-r.github.io

Main repository for R programming courses @ University of Cincinnati, courses and tutorials that focus on data wrangling, exploration, visualization, and analysis with R.

RBootcamp

New version of the RBootcamp using Ines Montani's format

gffpandas

Parse GFF3 into Pandas dataframes

Reading-PCA

mm3

Version 3 of Python mother machine analysis code

HerbASAP

An effort to automate image post processing for natural history collections

CSHMM-TF-for-time-series-scRNA-Seq

kdd2020

Website for KDD 2020 Tutorial on User-centric xai for healthcare

lukaszkujawa.github.io

COVID19_Sequence_Analysis

Analyzing the sequence of COVID-19 and comparing it to sequences of viruses that are known to cause pandemics

covid19

plotting functions for JHU COVID-19 data

intro_machinelearning

Introduction to Machine Learning

single-cell-pseudotime

An overview of algorithms for estimating pseudotime in single-cell RNA-seq data

springer_free_books

Python script to download all Springer books released for free during the 2020 COVID-19 quarantine

GhafariClark2019

ml-covid19

ML-based coronavirus trends' predicting project. Done as part of iCompBio 2020 REU and the UTC QinLab.