bioconda / bioconda-utils

Utilities for building and managing bioconda recipes

bioconda/bioconda-utils Issues

test/source_files seems dysfunctional in mulled tests
Updated a month ago2
`mulled-build` of Python package (no deps) fails in bioconda-utils >=2.15
Closed 2 months ago3
Current extended-base (`quay.io/bioconda/base-glibc-debian-bash:3.0`) for container builds yields docker images unusable on some systems
Closed 2 months ago10
PermissionError: [Errno 13] Permission denied: 'docker'
Closed 3 months ago2
Fail to install on python 3.12
Updated 5 months ago
argh.exceptions.AssemblingError when using bioconda-utils
Updated 5 months ago2
bioconda-utils autobump --create-pr crashes, but adding --no-shuffle fixes it
Updated 5 months ago
ERROR: recipes/vcboost/meta.yaml:0: linter_failure: An unexpected exception was raised during linting
Updated 6 months ago
Make git-lfs available at cloning time ?
Updated 6 months ago2
autobump for GitHub releases fails - presumably because of broken regex
Updated 6 months ago1
An error occurred while installing package 'bioconda::bioconductor-genomeinfodbdata-1.2.9-r42hdfd78af_0'.
Updated 6 months ago3
bioconda::bioconductor-genomeinfodbdata-1.2.9-r42hdfd78af_0 problems with installation
Updated 6 months ago7
Support other architectures also supported by conda-forge (e.g. Mac arm64)
Updated 9 months ago24
GithubRelease assets are not found via autobump
Closed 10 months ago3
False positive lint `version_constraints_missing_whitespacewhen` for unequal constraint `!=`
Closed a year ago1
BiocondaBot merge seems broken
Closed a year ago2
Bioconda pins an old libdeflate no longer present in conda-forge's current_repodata
Closed a year ago2
Invalid version: '' error in bioconda-utils autobump
Updated a year ago
Possibility to skip downloading channel info
Updated a year ago
Cannot install bioconda-utils: UnsatisfiableError
Closed a year ago4
Non-zero exit code but package get's build and uploaded successfully
Updated 2 years ago
autobump selects older hifiasm version due to changing tag pattern
Updated 2 years ago
Could not install bioconda-utils in new conda environment
Closed 2 years ago
There are outdated links to http://conda.pydata.org
Updated 2 years ago
another fix for the mulled build memory limitations
Updated 2 years ago
UnsatisfiableError: The following specifications were found to be incompatible with each other
Closed 2 years ago4
lint: missing space in dependency version pins
Closed 2 years ago
Unable to find conda-build=3.19.1.* for installing bioconda-utils
Updated 2 years ago3
FileNotFoundError when trying to build recipe
Closed 2 years ago
Internal AssertionError in build command
Updated 2 years ago2
HOME should be added to the environment
Updated 2 years ago
Bioconda pins an outdated version of libdeflate from conda-forge
Closed 2 years ago8
Wrong quay image requested when attemping test locally due to different format version.py generated by versioneer
Updated 2 years ago11
Thoughts on tool description in Bot's auto bump PR?
Closed 3 years ago3
Error with bioconda
Closed 3 years ago1
bioconda-utils autobump throws cryptic info/error `nextclade has selector in line %i (replace failed)`
Updated 3 years ago4
Build DAG is not generated properly
Updated 3 years ago
complains about valid use of `insteadOf` in my .gitconfig
Updated 3 years ago1
Bioconda install error
Closed 3 years ago1
Missing documentation regarding Java tools requiring font packages for downstream containers
Updated 3 years ago
Conda build not tracking wisecondorX repository
Updated 3 years ago
Add MACOSX_DEPLOYMENT_TARGET to cbc.yaml
Closed 3 years ago
Autobump incorrectly parses some URLs
Closed 3 years ago8
TypeError when trying to run bioconda-utils
Updated 4 years ago1
[Feature request] Add Lint for shellcheck
Updated 4 years ago
Ping package maintainers for relevant issues opened
Updated 4 years ago
Fix conda-forge feedstock links
Updated 4 years ago
bioconductor-skeleton: work around conda-build render issue with "package:" in summary
Updated 4 years ago
Core meeting agenda 2020-10-26
Closed 4 years ago
Handle autobump PRs more automatic
Updated 4 years ago1