hongqin

PythonDataScienceHandbook

Python Data Science Handbook: full text in Jupyter Notebooks

tqdm

:zap: A Fast, Extensible Progress Bar for Python and CLI

PlotNeuralNet

Latex code for making neural networks diagrams

deepmind-research

This repository contains implementations and illustrative code to accompany DeepMind publications

covid-19-data

A repository of data on coronavirus cases and deaths in the U.S.

machine-learning-book

Code Repository for Machine Learning with PyTorch and Scikit-Learn

synthea

Synthetic Patient Population Simulator

oneliners

Useful bash one-liners for bioinformatics.

CrypTen

A framework for Privacy Preserving Machine Learning

scGPT

SARS-CoV-2_Sequencing

A collection of sequencing protocols and bioinformatic resources for SARS-CoV-2 sequencing.

DeepLearningLifeSciences

Example code from the book "Deep Learning for the Life Sciences"

Py4Bio

Public data for the book Python for Bioinformatics

scLink

Inferring gene co-expression networks from single cell gene expression data

keras_dna

QuantumGRN

Quantum Gene Regulatory Networks with Application to Single-cell Data

MD-AD

QAGS

Quantum Accelerated Genome Sequencing

COVID-Climate

Publicly available data and codes in "Role of meteorological factors in the transmission of SARS-CoV-2 in the United States"

kdd-tutorial-2022

SARS-CoV-2_Evolution

uPolar

A-yeast-living-ancestor-reveals-the-origin-of-genomic-introgressions

AI-camp

DeepBio

A deep learning library for mining biomedical data including multi-omics data, clinical data and biological knowledge

docker-notebook-template

utc_lookout_remote_jupyter

There will be instructions in this repo that let anyone with access to SimCenter lookout clusters to spin up a remote Jupyter Notebook environment.

FederatedScope

An easy-to-use federated learning platform

covid

data and notebooks for covid research project

yeast-RLS