Feng Zeng's repositories
scSimulator
Nonparametric scRNA-seq simulator
SuffixArray
To build and manipulate suffix array
AMASS
Error-free prokaryotic OTU reconstruction
awesome-synthetic-biology
A curated list of Synthetic Biology / Genetic Engineering projects, articles and resources. The main idea is that everyone can contribute here, so we can have a central repository of informations about this fascinating subject that we all can keep up-to-date.
bigBlastParser
Parse (very big) NCBI BLAST xml output files (very fast) into an SQLite DB.
bioawk
BWK awk modified for biological data
cn-avg
Copy Number AVG pipeline for the analysis of NGS Cancer data
CROP
CROP: Clustering 16s rRNA for OTU Prediction
FESCO
Fast and error-tolerant long sequence comparison
GFA-spec
Graphical Fragment Assembly (GFA) Format Specification
gfakluge
A C++ library and utilities for manipulating the Graphical Fragment Assembly format.
pyglmnet
Python implementation of elastic-net regularized generalized linear models
RAMBL_Test
Test example for RAMBL install
RBRA_Test
Test example for RBRA
scClassifier
Single Cell Characterization
serialization
Boost.org serialization module
single_cell_intestine
R code for single-cell analysis of intestinal epithelial cells
skizze
A probabilistic data structure service and storage
SuffixTree
To build and manipulate suffix tree
swirl_courses
:mortar_board: A collection of interactive courses for the swirl R package.
tabtk
Toolkit for processing TAB-delimited format