hmartiniano / go_genes_semsim_parallel

R script to calculate a gene semantic similarity matrix for approved HGNC genes using the GOSemSim package

go_genes_semsim_parallel

R script to calculate a gene semantic similarity matrix for approved HGNC genes using the GOSemSim package

Usage

Create a conda environment

conda env create -n go -f environment.yml

Download hgcn file

wget ftp://ftp.ebi.ac.uk/pub/databases/genenames/new/tsv/hgnc_complete_set.txt

Activate conda environment

conda activate go

Run script

bash ./run.sh