hmartiniano

ngest

gprofiler_custom_gmt

alphafold

Open source code for AlphaFold.

annot

Snakemake pipeline for variant annotation with VEP

bio_embeddings

Get protein embeddings from protein sequences

bioinformatics-cookiecutter-template

A cookiecutter template to be used in bioinformatics and machine learning projects

biokge

bridge

cdlib

Community Discovery Library - (for networkx and igraph)

ClassifyCNV-docker

Dockerfile for ClassifyCNV

dgl-ke

High performance, easy-to-use, and scalable package for learning large-scale knowledge graph embeddings.

disorder

docker_cnvnator

Docker image for CNVnator on ubuntu 16.04

elasticsearch_loader

A tool for batch loading data files (json, parquet, csv, tsv) into ElasticSearch

faz

Data workflow tool with a syntax similar to drake.

gatk4-jupyter-notebook-tutorials

This repository contains Jupyter Notebooks containing GATK Best Practices Workflows

gnomad_python_api

🧬 gnomAD Python API is used to obtain data from gnomAD (genome aggregation database).

go_genes_semsim_parallel

R script to calculate a gene semantic similarity matrix for approved HGNC genes using the GOSemSim package

goatools

Python library to handle Gene Ontology (GO) terms

GraRep

A SciPy implementation of "GraRep: Learning Graph Representations with Global Structural Information" (WWW 2015).

GSEApy

Gene Set Enrichment Analysis in Python

hpo_enrichment

intervar-docker

Dockerfile for InterVar

learning_resources

llm-examples

Streamlit LLM app examples for getting started

optuna

A hyperparameter optimization framework

pandas-profiling

Create HTML profiling reports from pandas DataFrame objects

scrape-covid-sines

streamlit-example

Example Streamlit app that you can fork to test out share.streamlit.io

test-blog

test-blog