hengkp

awesome-thai-dev

A curated list of awesome technical libraries/articles/resources in Thai

code-server

VS Code in the browser

gdown

Google Drive Public File Downloader when Curl/Wget Fails

ChrisLUTs

A collection of LUTs for ImageJ/Fiji

GeneTonic

Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail

GeneTonic_supplement

Supplementary Information for the GeneTonic manuscript

seq2science

Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.

appyter-catalog

A catalog of appyter notebooks

biojupies-plugins

User-submitted RNA-seq data analysis tools for BioJupies.

L1000CDS2

An ultra-fast LINCS L1000 Characteristic Direction Signature Search Engine

john

John the Ripper jumbo - advanced offline password cracker, which supports hundreds of hash and cipher types, and runs on many operating systems, CPUs, GPUs, and even some FPGAs

PEASS-ng

PEASS - Privilege Escalation Awesome Scripts SUITE (with colors)

thc-hydra

hydra

CellTracking

Cell tracking using TensorFlow and BayesianTracker

DeepTree

Jupyter notebooks for deep lineage analysis of single-cell heterogeneity and cell cycling duration heritability.

EllipTrack

configs

Config files used to define parameters specific to compute environments at different Institutions

Intro-to-rnaseq-hpc-O2

This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster

STAR

RNA-seq aligner

SEP-L1000

Website for visualizing predicted drug side-effects using L1000 data (http://maayanlab.net/SEP-L1000/)

CellProfiler

An open-source application for biological image analysis

docker

cellprofiler-docker

Dockerfile to build a working CellProfiler (http://cellprofiler.org/) image

d2d

a modeling environment tailored to parameter estimation in dynamical systems

tellurium

Python Environment for Modeling and Simulating Biological Systems