hengkp's repositories
appyter-catalog
A catalog of appyter notebooks
ashlar
ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
cellcycle-classification
This code is for classify single cell data to cell cycle stages from CellProfiler csv output using MATLAB code.
celltracking
Cell Tracking is a semi-automatic application that be able to track the live cell imaging and turns it into the measured features of interest. With easy steps starting with tracking the segmented nucleus with continuing timepoints, then segmenting some other regions of interest (extended cytoplasm) and measuring its dynamical change of intensity. To add some new daughter cells during mitosis event is also possible with the “generate sister” mode. The export VDO file of single segmented nucleus or cell can also be created after the tracking process.
collectri_v_dorothea
SaezLab's Interns Project 2023
configs
Config files used to define parameters specific to compute environments at different Institutions
cycif-cellprofiler
This is an example of single-cell image segmentation using the CellProfiler pipeline.
demo-self-driving
Streamlit app demonstrating an image browser for the Udacity self-driving-car dataset with realtime object detection using YOLO.
electra-voting-platform
Electra: Online Voting Platform
FUCCItrack
FUCCItrack: an all-in-one software for single cell tracking and cell cycle analysis
i2k-2022-pyimagej
Workshop materials for "I2K 2022: From Images to Knowledge" conference
live-imaging-cellprofiler
This is an example of live single-cell image segmentation using the CellProfiler pipeline.
mcmicro
Multiple-choice microscopy pipeline
mediapipe_examples
This is a basic python-based example codes for Thai learners about the machine learning used in image recognition.
mgcalculator
Create migration-death relationship from would healing assay.
microbit-web-request
A MakeCode extension for sending and receiving HTTP requests.
ncov
Nextstrain build for novel coronavirus SARS-CoV-2
nf-tower
Nextflow Tower system
python-editor-v3
Micro:bit Educational Foundation Python Editor V3
PythonEditor
A MicroPython editor for the BBC micro:bit that works with browsers.
scimap
Spatial Single-Cell Analysis Toolkit
signature-commons-ui
A front-end UI for demoing API integration
stlite
Serverless Streamlit
thai-chatgpt-webapp
Thai ChatGPT Web Application
virusurf_downloader
virusurf downloader