Henk den Bakker's repositories
GTDB_Kraken
Kraken(2) database based on the GTDB project
PySnpSites
Experiments optimising python (with Cython)
SRA_SeqSeroandIsPCR
pipeline for download, assembly and in silico PCR for primer testing in python
ClonalFrameML
ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes
mockcommunity
Long-read mock community experiments
RetailBiofilmStudy
Rscripts and data for analyses of microbiota found in drains in retail delis
TreeToReads
Pipeline to generate NGS reads from a phylogeny