harrig12

ggraph

Grammar of Graph Graphics

orchard

gptstudio

GPT RStudio addins that enable GPT assisted coding, writing & analysis

serratus

Ultra-deep search for novel viruses

bd_rhapsody_velocyto

Nextflow workflow to run velocyto.py on BD Rhapsody BAM files

deepcell-tf

Deep Learning Library for Single Cell Analysis

jhelvy_distill

Source files for my personal website, built using the {distill} R package and deployed with netlify

pixture

HTML Image Gallery in R with responsive grid layout and lightbox.

noted

Lightweight CLI for taking markdown notes in a journal-like (time-seried) fashion

maftools

Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.

emo

Easily insert emoji into R and RMarkdown

pangolin

Software package for assigning SARS-CoV-2 genome sequences to global lineages.

artic-ncov2019

ARTIC nanopore protocol for nCoV2019 novel coronavirus

svm-r-markdown-templates

This is my (deprecated) suite of R Markdown templates for academic manuscripts, beamer presentations, and syllabi. DOWNLOAD {stevetemplates} INSTEAD.

deconstructSigs

deconstructSigs

mathematics-for-machine-learning

A set of notes, in the form of a simple Github Pages site, which will serve as a complete crash course on the various areas of mathematics essential to understanding machine learning.