haessar / peaks2utr

A robust Python tool for the annotation of 3’ UTRs

https://doi.org/10.1093/bioinformatics/btad112

haessar/peaks2utr Issues

'colour' variable added to GTF files
Closed 6 months ago2
Validation of matching seqids
Closed 6 months ago
OSError: [Errno 39] Directory not empty: '/path/to/.cache'
Closed 5 months ago8
What is the default for the option '--max-distance'?
Closed 10 months ago3
sqlite3.IntegrityError
Closed a year ago2
Use of bam file generated from Bulk RNA-seq alignment
Closed 10 months ago1
Error in trying to run Demo
Closed a year ago4
ValueError: Duplicate ID
Closed a year ago6
ERROR - abnormal 3' UTR
Updated a year ago2
Questions about three_prime_utr annotation behavior
Closed a year ago1
Error "[E::idx_find_and_load] Could not retrieve index file
Closed a year ago2
IndexError: list index out of range
Closed a year ago4
Too many files open error
Closed a year ago14
Recommended way to convert output GFF file back to GTF?
Closed a year ago2
Update genome annotation file with multiple samples?
Updated a year ago1
Warning message: Genometools binary can't be called
Closed a year ago2
Example run failure
Closed a year ago5
Installation failure with Python 3.10
Closed a year ago4