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Gymrek Lab at UC San Diego (gymrek-lab)

Gymrek Lab at UC San Diego

gymrek-lab

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Code and docs produced by members of the Gymrek Lab at the University of California, San Diego.

Location:United States of America

Home Page:https://gymreklab.com/

Twitter:@mgymrek

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Gymrek Lab at UC San Diego's repositories

TRTools

Toolkit for genome-wide analysis of tandem repeats

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EnsembleTR

Tools for merging Tandem Repeat VCF files

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LongTR

Tandem repeat genotyping with long reads

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webstr

WebSTR database and web application code

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CAHMML

Custom Lambda HMM Library

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happler

A haplotype-based fine-mapping method

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HipSTR

This is a Gymrek lab version HipSTR.

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.github

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core

The Gymrek Lab's core python library

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personal-genomics-textbook

Textbook for CSE284: Personal Genomics

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CITRUS

Phenotype simulation tool with flexibility to model complex interactions.

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gymreklab.github.io

Lab website and internal lab wiki

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