Mike Smith's repositories
AnnotationHub
Client for the Bioconductor AnnotationHub web resource
basilisk
Python for Bioconductor
benchmark-hdf5-clustering
Benchmarking project for scalable clustering algorithms with large observations and HDF5 files
bioconda-recipes
Conda recipes for the bioconda channel.
BiocStickers
Stickers for some Bioconductor packages - feel free to contribute and/or modify.
BraDiPluS
BraDiPluS (Braille Display Plugs Data Analysis) is an R package to process and analyse data produced using the microfluidic platform for functional drug screening of patient biopsies developed in collaboration with Merten group (EMBL).
CoGAPS
Bayesian MCMC matrix factorization algorithm
CSAMA
Course material for CSAMA: Statistical Data Analysis for Genome Scale Biology
CumberlandLodge
program and scripts for Cumberland Lodge 2019
DropletUtils
Clone of the Bioconductor repository for the DropletUtils package.
evolution-on
evolution-tray plugin suitable for arch packaging and with useful patches
ExperimentHub
Client to access ExperimentHub resources
hdf5-blosc
Filter for HDF5 that uses Blosc
IRONMAN-Results
Download and process results tables from IRONMAN events
mbkmeans
K-means clustering for large single-cell datasets
mzR
This is the git repository matching the Bioconductor package mzR: parser for netCDF, mzXML, mzData and mzML files (mass spectrometry data)
OrchestratingSingleCellAnalysis
An online companion to the OSCA manuscript demonstrating Bioconductor resources and workflows for single-cell RNA-seq analysis.
OSCABase
Single-cell-related content for the OSCA Book.
rhdf5filters-benchmarks
Shiny app for displaying results of HDF5 compression filter benchmarking
Rhtslib
HTSlib high-throughput sequencing library as an R package
singularity-rstudio
RStudio Server in a Singularity container
tufte
Tufte Styles for R Markdown Documents