Mike Smith (grimbough)

grimbough

Geek Repo

Home Page:msmith.de

Twitter:@grimbough

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Mike Smith's repositories

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AnnotationHub

Client for the Bioconductor AnnotationHub web resource

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basilisk

Python for Bioconductor

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benchmark-hdf5-clustering

Benchmarking project for scalable clustering algorithms with large observations and HDF5 files

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BiocMetaWorkflow

Bioconductor Workflow describing (and testing) how to publish a Bioconductor Workflow

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bioconda-recipes

Conda recipes for the bioconda channel.

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BiocStickers

Stickers for some Bioconductor packages - feel free to contribute and/or modify.

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BraDiPluS

BraDiPluS (Braille Display Plugs Data Analysis) is an R package to process and analyse data produced using the microfluidic platform for functional drug screening of patient biopsies developed in collaboration with Merten group (EMBL).

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CoGAPS

Bayesian MCMC matrix factorization algorithm

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CSAMA

Course material for CSAMA: Statistical Data Analysis for Genome Scale Biology

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CumberlandLodge

program and scripts for Cumberland Lodge 2019

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DropletUtils

Clone of the Bioconductor repository for the DropletUtils package.

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evolution-on

evolution-tray plugin suitable for arch packaging and with useful patches

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ExperimentHub

Client to access ExperimentHub resources

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hdf5-blosc

Filter for HDF5 that uses Blosc

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IRONMAN-Results

Download and process results tables from IRONMAN events

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mbkmeans

K-means clustering for large single-cell datasets

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mzR

This is the git repository matching the Bioconductor package mzR: parser for netCDF, mzXML, mzData and mzML files (mass spectrometry data)

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OrchestratingSingleCellAnalysis

An online companion to the OSCA manuscript demonstrating Bioconductor resources and workflows for single-cell RNA-seq analysis.

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OSCABase

Single-cell-related content for the OSCA Book.

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rhdf5filters-benchmarks

Shiny app for displaying results of HDF5 compression filter benchmarking

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Rhtslib

HTSlib high-throughput sequencing library as an R package

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singularity-rstudio

RStudio Server in a Singularity container

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