This package brings the tradition of geospatial statistics to spatial omics by wrapping classical geospatial packages such as spdep and adespatial to be used with the SpatialFeatureExperiment class, which extends SpatialExperiment with sf.
The companion website for this package includes vignettes that showcase the functionality of Voyager in the context of the Visium, Slide-seq V2, CosMx, Xenium, and MERFISH technologies.
This package is in Bioconductor version 3.16 and above. Install with
if (!requireNamespace("BiocManager")) install.packages("BiocManager")
BiocManager::install(version = "3.16") # Or a higher version in the future
BiocManager::install("Voyager")The main branch in this repo is the release version. The development version of Voyager can be installed from GitHub with:
# install.packages("remotes")
remotes::install_github("pachterlab/voyager", ref = "devel")Or from Bioconductor with:
BiocManager::install("Voyager", version = "devel")