Gleb Kuznetsov's repositories
ultrasoundsim
Experimenting with Ultrasound simulation software packages
semanticify
Make a resource quickly understandable by a human, while laying the groundwork for interesting data mining.
awesome-deepbio
A curated list of awesome deep learning applications in the field of computational biology
cloudbiolinux
CloudBioLinux: configure virtual (or real) machines with tools for biological analyses
cureffi
CureFFI.org
demo_project
Basic Django demo application
Dissertate
Beautiful Word and LaTeX dissertation templates.
drb_class_notes
Notes from January 2015 Harvard Developmental and Regenerative Biology class DRB 330qc / DRB331hc
freebarcodes
FREE Divergence Error-Correcting DNA Barcodes
libnano
helpful tools for working with nucleic acids
lumpy-sv
lumpy: a general probabilistic framework for structural variant discovery
mcadre
metabolic Context-specificity Assessed by Deterministic Reaction Evaluation (mCADRE) for generating draft tissue-specific metabolic models
millstone
Genome engineering and analysis software
mind
a program to predict transcription factor binding sites from single-nucleotide deletion MPRAs
misc_figures
Miscellaneous code to generate figures
misc_scripts
Miscellaneous scripts
optmage
Scripts for designing oligos and primers for MAGE (Multiplex Automated Genome Engineering)
pip-chill
Like pip freeze but just cool
Protocols
Repository for Public Protocols
pydna
Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning in Python and Jupyter notebooks.
recoli57
Supporting code for Ostrov et al., Science, 2016
recoli_c321d_genome_annotation
Dump of scripts and intermediate files used to generate E. coli C321.deltaA genome (Lajoie et al, Science 2013)
remember-me
Automatically exported from code.google.com/p/remember-me
tensorflow
Computation using data flow graphs for scalable machine learning
udacity-tensorflow
Udacity TensorFlow assignments