girder / viime

https://viime.org

girder/viime Issues

Enable SVG download alongside PNG
Updated a year ago
Browser not supported message when installed locally even with supported browser
Updated 2 years ago
Whitespace in CSV fields treated as NaN rather than missing data
Updated 3 years ago
Downloading PNG not working for BoxPlots and Group Prediction (AUC)
Closed 3 years ago7
HeatMap Options
Updated 3 years ago
Duplicate requests to ROC cause display flicker
Updated 3 years ago1
Advice about collaboration on landing page is incomplete
Updated 4 years ago
Allow OpenCPU to return JSON data
Closed 4 years ago
The term "selection" is overloaded
Closed 4 years ago3
Loading OPLSDA causes CSV to be deleted
Updated 4 years ago2
Implement VIP score script and display bar chart
Closed 4 years ago1
Initial OPLSDA group selectors
Updated 4 years ago
Score plot scatter colors not matching confidence ellipse
Closed 4 years ago2
Save/load datasets as JSON with pretreatment options
Updated 4 years ago
Add description for PCA/PLSDA/Group Prediction Analyses
Closed 4 years ago1
Wilcox and ANOVO Volcano plots don't seem to render.
Closed 4 years ago7
Heatmap tooltips don't show up immediately
Updated 4 years ago
Heatmap labels can be too small to read
Closed 4 years ago8
Comparison to other tools
Closed 4 years ago3
Offer a docker image that also runs the web client
Closed 4 years ago
MNAR and MCAR imputation needs a None selection. It defaults to always using MCAR selection.
Closed 4 years ago3
Including example datasets in local installation
Closed 4 years ago3
Add pan/zoom capability to the PCA score and loadings plots
Updated 4 years ago1
In correlation networks, whats the different between an orange edge vs a grey edge ? I understand the thickness is stronger correlation but not the color difference.
Closed 4 years ago2
Add an infobox to the correlation network view to explain how it works
Closed 4 years ago
Factor analysis sentry error
Closed 4 years ago
Zooming in/out resizes the window but doesn't resize the plots itself
Closed 4 years ago3
Increase font for labels in correlation network view
Updated 4 years ago
Indicator of how many rows/columns are masked
Updated 4 years ago
OPLSDA
Updated 4 years ago
Sometimes `group_levels` doesn't get set when selecting a group column
Updated 4 years ago
Metabolite Box plot, when I group by treatment, the plot disappears
Closed 4 years ago4
Refactor uploading in E2E testing
Updated 4 years ago
Network view zooming
Closed 4 years ago2
Use optional chaining inside Vue templates once upgraded to Vue 3
Closed 4 years ago1
It would be nice If I could zoom on an area of the plot especially for PCA loadings plot to check and see what metabolites cluster together.
Closed 4 years ago1
the PCA Scree plot description says the vertical cutoff lines are provided at 50, 80 and 90, but I only see 2 lines. also good to annotate these (If I'm saving the plots).
Closed 4 years ago1
Add labels to the scree plot diagnostic cutoff lines
Updated 4 years ago
Automated testing
Closed 4 years ago2
Clarify setup instructions
Closed 4 years ago5
Add documentation for running docker-compose without ldc
Closed 4 years ago1
a few issues using the tool
Closed 4 years ago3
No ANOVA results looks like error condition
Closed 4 years ago1
Typescript Volcano Plot
Closed 4 years ago
Network Search Shift-Click Functionality
Updated 4 years ago1
Heatmap labels, ANOVA no results, network view zoom
Closed 4 years ago3
Convert ScreePlot to use TypeScript
Closed 4 years ago
Investigate using watchEffect instead of update functions
Updated 4 years ago1
Uploading an invalid file causes a Sentry error
Updated 4 years ago
VUE_APP_SERVER_ADDRESS - not documented and no default
Closed 4 years ago7